Jiangxi LN Companys cooperative governance in the process of resource integration between agricultural enterprises and farmers shows that in line with the different needs of the cooperation stages, the company adopts different governance mechanisms, highlights the comparative advantages of different mechanisms, and constructs a complete cooperative governance system. In the initial stage, the company obtains the trust and selfidentity of farmers by means of the reputation embedding mechanism; in the development stage, it constructs the benefit linking mechanism of “benefit sharing and risksharing” to strengthen the cooperation ties with farmers; in the expansion stage, it uses the reputation diffusion mechanism to attract potential partners, break through the geographical limit and build a cooperative network. Reputation and benefit linking mechanism  coordinates and couples with each other to jointly promote the stable and lasting cooperative relationship between company and farmers.